Ab initio prediction of the polymorphic structures of pyrazinamide – A validation study

Main Article Content

Arputharaj David Stephen
Pallipurath Veleelath Nidhin
Ponnusamy Srinivasan

Abstract

A validation study to predict the possible stable polymorphs of pyrazinamide within the low energy conformational region of the flexible torsion angle was performed through a potential energy surface (PES) scan by gas phase optimisation using the MP2/6-31G(d,p) method. Hypothetical crystal structures with favourable packing density for each of the stable conformers generated from the PES scan were generated using a global search with a repulsion only potential field. The densest crystal structures with stable energy were analyzed with more accurate lattice energy minimisation via distributed multipole analysis using the repulsion–dispersion potential. The stability of the predicted crystal structures with similar close packing to the known experi­mental polymorphs of the pyrazinamide molecule were analyzed by inspecting their intermolecular short contacts. Studies to analyze the second derivative mechanical properties from the Hessian matrix were realised to emphasise the thermodynamic stability of predicted polymorphs of pyrazinamide.

Downloads

Download data is not yet available.

Metrics

Metrics Loading ...

Article Details

How to Cite
[1]
A. David Stephen, P. V. Nidhin, and P. Srinivasan, “Ab initio prediction of the polymorphic structures of pyrazinamide – A validation study”, J. Serb. Chem. Soc., vol. 81, no. 7, pp. 763–776, Aug. 2016.
Section
Theoretical Chemistry

References

M. Vasileiadis, A.V. Kazantsev, P.G. Karamertzanis, C. S. Adjiman, C. C. Pantelides, Acta Crystallographica Section B. 68 (2012) 677

D. A. Bardwell, C. S. Adjiman, Y. A. Arnautova, E. Bartashevich, S. X. M. Boerrigter, D. E. Braun, A. J. Cruz-Cabeza, G. M. Day, R. G. Della Valle, G. R. Desiraju, B. P. van Eijck, J. C. Facelli, M. B. Ferraro, D. Grillo, M. Habgood, D. W. M. Hofmann, F. Hofmann, K. V. J. Jose, P. G. Karamertzanis, A. V. Kazantsev, J. Kendrick, L. N. Kuleshova, F. J. J. Leusen, A. V. Maleev, A. J. Misquitta, S. Mohamed, R. J. Needs, M. A. Neumann, D. Nikylov, A. M. Orendt, R. Pal, C. C. Pantelides, C. J. Pickard, L. S. Price, S. L. Price, H. A. Scheraga, J. van de Streek, T. S. Thakur, S. Tiwari, E. Venuti,I. K. Zhitkov, Acta Crystallographica Section B. 67 (2011) 535

G. M. Day, Crystallography Reviews. 17 (2011) 3

G. Shadeed, International Journal of Pharmacy and Pharmaceutical Science. 7 (2015) 581

Y. Takaki, Y. Sasada,T. Watanabe, Acta Crystallographica. 13 (1960) 693

G. Ro,H. Sorum, Acta Crystallographica Section B. 28 (1972) 991

Y. -H. Luo, Q. -L. Liu, L. -J. Yang, W. Wang, Y. Ling, B. -W. Sun, Res Chem Intermed. 41 (2015) 7059

M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, G. A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H. P. Hratchian, A. F. Izmaylov, J. Bloino, G. Zheng, J. L. Sonnenberg, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T. Vreven, J. A. Montgomery Jr., J. E. Peralta, F. Ogliaro, M. J. Bearpark, J. Heyd, E. N. Brothers, K. N. Kudin, V. N. Staroverov, R. Kobayashi, J. Normand, K. Raghavachari, A. P. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, M. Cossi, N. Rega, N. J. Millam, M. Klene, J. E. Knox, J. B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, R. L. Martin, K. Morokuma, V. G. Zakrzewski, G. A. Voth, P. Salvador, J. J. Dannenberg, S. Dapprich, A. D. Daniels, Ö. Farkas, J. B. Foresman, J. V. Ortiz, J. Cioslowski, D. J. Fox. Gaussian, Inc.: Wallingford, CT, USA, 2009

J. R. Holden, Z. Du, H. L. Ammon, Journal of Computational Chemistry. 14 (1993) 422

S. L. Price, M. Leslie, G.W. A. Welch, M. Habgood, L. S. Price, P. G. Karamertzanis, G. M. Day, Physical Chemistry Chemical Physics. 12 (2010) 8478

Z. F. Weng, W. D. S. Motherwell, F. H. Allen, J. M. Cole, Acta Crystallographica Section B. 64 (2008) 348

C. Ouvrard, S. L. Price, Crystal Growth & Design. 4 (2004) 1119

H. Nowell,S. L. Price, Acta Crystallographica Section B. 61 (2005) 558

H. L. Ammon, Z. Du, J. R. Holden, L. A. Paquette, Acta Crystallographica Section B. 50 (1994) 216

A. J. Stone, GDMA. University of Cambridge, UK, 1999

P. P. Ewald, Annalen der Physik. 369 (1921) 253

J. A. Chisholm, S. Motherwell, Journal of Applied Crystallography. 38 (2005) 228

A. T. Anghel, G. M. Day, S. L. Price, CrystEngComm. 4 (2002) 348

S. Madan Kumar, B. C. Manjunath, G. S. Lingaraju, M. M. M. Abdoh, M. P. Sadasiva, N. K. Lokanath, Crystal Structure Theory and Applications. 2 (2013) 124

M. A. Spackman, J. J. McKinnon, CrystEngComm. 4 (2002) 378.